Not sure if this is a bug or not, but i have started 3 saves and have the same issue on all of them.
When i choose to ignore selection advice for a position, so i uncheck it, instead of leaving the original player there, it clears that position.
Example; Assistant Manager recommends that i change my AMC, DCR and DR, i want to keep the AMC, so i uncheck the box, instead of leaving the AMC in position, it clears that spot when i hit use suggested squad.
If this was intentional, that doesnt make sense to me. The only time this would make sense, is if the selection was to move the AMC to AMR, and that was selected, as you cant have the one personal playing in 2 different positions.